PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01558.1.p
Common NameMIMGU_mgv1a014733mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 181aa    MW: 19619.5 Da    PI: 5.2621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01558.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18250355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Migut.B01558.1.p  2 YRGVRKRN-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 50
                      9****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-35164IPR001471AP2/ERF domain
PROSITE profilePS5103223.868158IPR001471AP2/ERF domain
CDDcd000188.38E-31260No hitNo description
Gene3DG3DSA:3.30.730.101.3E-32259IPR001471AP2/ERF domain
PfamPF008471.4E-13250IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22259IPR016177DNA-binding domain
PRINTSPR003677.4E-11213IPR001471AP2/ERF domain
PRINTSPR003677.4E-112440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MYRGVRKRNW GKWVCEIREP RKKSRIWLGT YPTAEMAARA HDVAALAIKG QSAYLNFPHL  60
AEYLPRPAST APKDIQAAAA EAAAAAAFPE EISRSSDEQA EPSQSKLASS HSSTNLQETS  120
NSASTAHEAD DTFFDLPDLS LGGSDHSGNG YSYYASSSSW QLAGADACFR LEDPFLWESN  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-182591573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01558.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843922.11e-130PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ74e-54ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A022QT511e-129A0A022QT51_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]