PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01119.1.p
Common NameMIMGU_mgv11b003535mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 480aa    MW: 55031.5 Da    PI: 9.1773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13954248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g W   Ede+l+ av ++G+++W +I++ +  +++++qck rw+++l
  Migut.B01119.1.p  9 GVWKNTEDEILKAAVMKYGKNQWPRISSLLL-RKSANQCKARWYQWL 54
                      78****************************9.*************97 PP
2Myb_DNA-binding21.55.5e-0761103248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT eEde+l+++ k +++  W+t ++ +g  Rt  qc +r+ k+l
  Migut.B01119.1.p  61 TEWTREEDEKLLHLAKSMPTL-WRT-MSIFG--RTSSQCLERYEKLL 103
                       68*******************.***.88886..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.157158IPR017930Myb domain
SMARTSM007177.3E-14756IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-18857IPR009057Homeodomain-like
CDDcd001673.61E-111154No hitNo description
PfamPF139211.3E-121171No hitNo description
SuperFamilySSF466891.69E-1634105IPR009057Homeodomain-like
CDDcd116595.48E-2456106No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1158104IPR009057Homeodomain-like
PROSITE profilePS512949.2659107IPR017930Myb domain
SMARTSM007176.5E-659105IPR001005SANT/Myb domain
PfamPF118312.9E-13329470IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MRTMVKGGGV WKNTEDEILK AAVMKYGKNQ WPRISSLLLR KSANQCKARW YQWLDPSIKK  60
TEWTREEDEK LLHLAKSMPT LWRTMSIFGR TSSQCLERYE KLLDAACGNN IDDYDPRKLR  120
PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARKLAS  180
LQKTRELKAA GADVRQRKRK TSGIDYNAEI PFEKKPPPGF YDIGDEDRPV ELFKFPTSIE  240
EIEGEQRVDK EALLRKKDVA RNKIAQRHCA PSAILQGSKL NDLEAVRKRS RLNLPAPQIR  300
DRDLEAMAKI GIASDLVGND DIGMRGCGKL RRSELRKEVL SGFKNVPQPK NEYRVVTERF  360
RDDDDEEEPG EKLEEDISDR IDRERAEEEA LLEKKKRASS DLVRNSLVRS DKDKSSFVHP  420
TPVELADELI RKELRSLLDE KAIKKGKRAA NEKSVHVPSV DDFEEYELKE VGNPVSFLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-12123173320Cell division cycle 5-like protein
5xjc_L1e-12123173320Cell division cycle 5-like protein
5yzg_L1e-12123173320Cell division cycle 5-like protein
5z56_L1e-12123173320Cell division cycle 5-like protein
5z57_L1e-12123173320Cell division cycle 5-like protein
5z58_L1e-12123173320Cell division cycle 5-like protein
6ff4_L1e-12123173320Cell division cycle 5-like protein
6ff7_L1e-12123173320Cell division cycle 5-like protein
6icz_L1e-12123173320Cell division cycle 5-like protein
6id0_L1e-12123173320Cell division cycle 5-like protein
6id1_L1e-12123173320Cell division cycle 5-like protein
6qdv_O1e-12123173320Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200QRKRKT
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01119.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850000.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-164CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A022QH030.0A0A022QH03_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-161cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]