PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01089.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29713 Da    PI: 4.5964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.8e-131047239
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                      +i n+s+r+  f kR + +lKKA+ELS+LC++e  +i+
  Migut.B01089.1.p 10 QIANESKRNAVFRKRVESLLKKANELSILCGIEMGIIV 47
                      799*******************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-10165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.189147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-17297IPR002100Transcription factor, MADS-box
CDDcd002666.77E-19289No hitNo description
PRINTSPR004045.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-131148IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTRKKIKHEQ IANESKRNAV FRKRVESLLK KANELSILCG IEMGIIVKRG EDNNPNNANP  60
IFWPSPEVFT ERLHKFTNFS NFEISKKMVT KEKYMEQALN AEKAILSKSK KIIEVKESQE  120
SIKEAMKGMC IDEIDTSHLN ELNLFVDEML TKLGDTTDDN NNNNNNNNNN NNNNNNNNNN  180
NINININNIN INNNINDNEQ EPMDLLENMK NDGWFIDTMA ERQEEEVVAG FFEVPWNNII  240
GGGDDETAGT SSAASPANGG FQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01089.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855105.11e-148PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A022Q2111e-101A0A022Q211_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-16M-type_MADS family protein