PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00988.2.p | ||||||||
Common Name | LOC105958213, MIMGU_mgv1a015972mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 125aa MW: 13950.1 Da PI: 10.6905 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61 | 1.5e-19 | 17 | 50 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk++ Migut.B00988.2.p 17 CSDCKTTKTPLWRSGPSGPKSLCNACGIKHRKRR 50 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.191 | 11 | 47 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.4E-13 | 11 | 63 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-13 | 13 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-16 | 15 | 51 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.71E-15 | 16 | 66 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 17 | 42 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.6E-17 | 17 | 50 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MLQEEGDLSD TTNKKSCSDC KTTKTPLWRS GPSGPKSLCN ACGIKHRKRR PAEGWKNEVK 60 KGKIGKTRKM IKPLGEKVEI ENSEEERSRS MKKKSRRRQS QSQWGEVERA ALLLMALSCG 120 AVFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00988.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837670.1 | 1e-83 | PREDICTED: GATA transcription factor 16-like | ||||
TrEMBL | A0A022RBZ8 | 3e-82 | A0A022RBZ8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00988.1.p | 5e-83 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 9e-15 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00988.2.p |
Entrez Gene | 105958213 |