PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00945.1.p | ||||||||
Common Name | MIMGU_mgv1a022917mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 139aa MW: 15130.1 Da PI: 4.139 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 31.5 | 4.2e-10 | 23 | 61 | 58 | 96 |
NF-YB 58 krktingddllwalatlGfedyveplkvylkkyrelege 96 r+ + ++d++ ++a+lGf+dyve lk +l+kyr + e Migut.B00945.1.p 23 MRRRLFTKDVIASMASLGFDDYVELLKFFLNKYRAEDHE 61 58888999**************************87766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.36E-6 | 1 | 66 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.0E-7 | 24 | 67 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MPMTNIVRIL CRTLPPHAKI SDMRRRLFTK DVIASMASLG FDDYVELLKF FLNKYRAEDH 60 ERSASIGTQQ PPAAPVAPPV PAPPPATLVV MGDGAVIVDD EEEVDPDEYI GFDEVIRMYF 120 LNDYGDGDAE GSPSSGGD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00945.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857869.1 | 5e-39 | PREDICTED: nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A022RYL0 | 2e-95 | A0A022RYL0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00945.1.p | 3e-96 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 4e-13 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00945.1.p |