PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00890.1.p
Common NameLOC105948592, MIMGU_mgv11b016914mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 450aa    MW: 50734.8 Da    PI: 6.8232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Migut.B00890.1.p 14 KGLWSPEEDEKLIQHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                      678*******************************************97 PP
2Myb_DNA-binding44.53.7e-1467109145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg ++++E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w+
  Migut.B00890.1.p  67 RGTFSQDEENLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109
                       899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.578965IPR017930Myb domain
SuperFamilySSF466894.49E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001672.56E-121761No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.45866116IPR017930Myb domain
SMARTSM007172.4E-1266114IPR001005SANT/Myb domain
PfamPF002499.7E-1367109IPR001005SANT/Myb domain
CDDcd001674.79E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIQHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS DVDLLVNDDK PPSVTANSNN EKTSEANSSE FSDNNISNNL VLPEKPIDRR  180
CYPPSAGHEF FLNRFIASHE SSTATTSKDM SGFLSFQQQM SYGPNIGLSM NTDTTNIFFD  240
NPNSDHFGAF MPPPATSRIK QSPAANFVNN NNNNNNNNNN NNNNSVNSFN VKFENNNNNN  300
ISTDENLQTN CSFFDTNIAF SWAAADTCTT KSAADHQKEQ PSLIGHEDIK WSEYLHTPFL  360
MAGNMQINHH HNNNNNNTNG ADHDQEIMYA AAETTTKSQV NYTEEASLTN IWHQNQHQQQ  420
LVQHSLQATT DILYNKHFQG LPATFGQFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827267.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A022PV270.0A0A022PV27_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.13e-93myb domain protein 61