PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00888.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 604aa    MW: 65412.9 Da    PI: 8.1618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00888.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.4e-16367413455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Migut.B00888.1.p 367 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 413
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20360426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-20360421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-16366417No hitNo description
PfamPF000101.9E-13367413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MPLSEFLRMA RGQLDSGHQK PTNLSSRPDD ELVELVWENG QIMMQGQSSR VPKSPPRKSR  60
DPGLLLGNSR IGKFDVVDSV PDDIELDFDQ DDEMVPWLNY PIEDDALAQL PEISSLTAQN  120
SFPSAEKKSS CGQNVSNLYT CSSSALSSSS KSHMLSSWQP GTSNAVGQQQ QPISNLNLMN  180
FSHFARPDKT LVKSNFSNPD AIPTVSSVLE RMEIREKGSS PASGSNLVKK SAFVDRFNIT  240
RKDVASREPV FNAAAKGLCP TERSKHLCVE NAIKNDKPVI QSSNGDSVKK QSKPVEPVVA  300
SSSVGSGNSG DRVSCEQTYN SRRKRKFRDI EESECHSDDI DTESVGAKKP SLGRGGGGSK  360
RSRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKADKAS MLDEAIEYLK TLQLQVQIMS  420
MGAGLCMPQM MFPAGMHPAH VPHFPPMGIG MGMGMGMGMG MGMGMGMGFG MDHMIDMNGR  480
SSGYPIFPAP PLSGPTTFQR IPGPTNFPVY GQPSQGLHNL VPRPPLAPST SQPHATPIAK  540
SPLMCNAEAS SSLNRKSDQM QATNEVITKQ VAAREIKTAA EASGTTAVTS TTETDINKKP  600
GYD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00888.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012859050.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A0H3YC531e-170A0A0H3YC53_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.B00888.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-43phytochrome interacting factor 3