PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00723.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 658aa    MW: 73633.8 Da    PI: 6.2874
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00723.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22127227198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+++       ++++ +  +l+  d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F   +
  Migut.B00723.1.p 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--R 215
                       99****************************975444444..8************************************************..4 PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                        +++el+v+v+r
  Migut.B00723.1.p 216 GENGELRVGVRR 227
                       49999*****97 PP
2Auxin_resp111.21e-36253335183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+st++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv + +++ W++S+WrsLk
  Migut.B00723.1.p 253 ASHAISTRTLFSVFYKPRTSRSEFIVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGNNSSSCWTDSEWRSLK 335
                       789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-43117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-39124242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-20125227No hitNo description
PROSITE profilePS5086311.237127229IPR003340B3 DNA binding domain
PfamPF023621.9E-20127227IPR003340B3 DNA binding domain
SMARTSM010198.0E-21127229IPR003340B3 DNA binding domain
PfamPF065071.1E-34253335IPR010525Auxin response factor
PfamPF023091.2E-5534571IPR033389AUX/IAA domain
PROSITE profilePS5174524.71534627IPR000270PB1 domain
SuperFamilySSF542771.83E-11534612No hitNo description
PfamPF023097.4E-7581625IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MAHLAANHFG GGPPQGALNE ALYKELWHAC AGPLVTVPRE NERVYYYPQG HMEQLEASTH  60
QGLDQQLPSF SLPSKILCKV VHVQLRAESD TDEVYAQVTL IPEQDQSEIT SPDPPLPEPQ  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMTQ QPPWQELVAS DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAISTR TLFSVFYKPR TSRSEFIVSL NKYLEAQNHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVGN NSSSCWTDSE WRSLKVQWDE PSSILRPDRV SPWEIEPLVA  360
ATPPNSQTQQ RNKRARPPVL PSPMQDLSPL GMWKSPSESP SFRGLYQSPK LSSNTRASPM  420
SYTDNLMPVS SNSAYQPNQI ETAAESFTPV SEKRQVNGCR LFGIELVDHS TGDDTSAACQ  480
PGAAIEDSRI PLDSDYEQQS EPSNRNPSDV PSASYDPDKF CLRSPHEPHN RQIRSCTKVH  540
MQGIAVGRAV DLTRFDCYED LLKKFEEMFE IVGELSGPTK KWQVVYTDDE DDMMMVGDDP  600
WHEFCTMVKK IYIYTAEEAK KLSPKIKLPI SEVQSGKLNS DAAVITEEQS STVGSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.043581355Auxin response factor 1
4ldw_A0.043581355Auxin response factor 1
4ldw_B0.043581355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00723.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840249.10.0PREDICTED: auxin response factor 1
RefseqXP_012840250.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A022R4X40.0A0A022R4X4_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]