PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00543.1.p
Common NameLOC105949686, MIMGU_mgv1a010122mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 322aa    MW: 34569.2 Da    PI: 5.2466
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00543.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16240275134
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg
  Migut.B00543.1.p 240 CRHCGNSSksTPMMRRGPDGPRTLCNACGLKWANKG 275
                       ******9999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.8E-11104139IPR010399Tify domain
PROSITE profilePS5132014.92104139IPR010399Tify domain
PfamPF062001.8E-12107138IPR010399Tify domain
PROSITE profilePS5101713.225171213IPR010402CCT domain
PfamPF062032.9E-16171213IPR010402CCT domain
SMARTSM004014.3E-14234302IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.288234293IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12235289No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14238281IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.72E-14239282No hitNo description
PfamPF003202.2E-14240275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440240267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYGPPPPHAS MNDTTAAAAA AEQRRQGSTR IEDEDDEDDV VQCSNGGDND DDDDIDNLPS  60
RIGYVPSNNS HSPHALSGGG GLEVIEADAL YAADMPPPVG PVPGEGGADQ LTLSFQGEVY  120
VFDSVSPEKV QAVLLLLGGY EVPTGIPTPG MTPQNHRNLG DYPGRSSQPQ RAASLNRFRE  180
KRKERCFDKK IRYTVRKEVA LRMQRKKGQF TSSKAVSEEP GASSADWTGT SVQEEQETSC  240
RHCGNSSKST PMMRRGPDGP RTLCNACGLK WANKGILRDL SKVPVTPVQQ QHRAIKLNGD  300
QNGEDTVVNL PPTNVITTSS G*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00543.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828458.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL73e-82GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A022PSD20.0A0A022PSD2_ERYGU; Uncharacterized protein
STRINGMigut.B00543.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-85ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]