PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00488.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 152aa MW: 17205.2 Da PI: 9.2045 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 86.6 | 8.6e-27 | 1 | 129 | 1 | 121 |
GAGA_bind 1 mdddgsre..rnkg.yye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 mdd+g+re r+k+ + + +++s+k q+m +aerda+i+ernla+sekk a+aerdma lqrd+a+aern+a++erdn++++l++ Migut.B00488.1.p 1 MDDSGHREngRHKPpQGQwlmqQQPSMK-----QIMGFMAERDAAIQERNLAISEKKTALAERDMAILQRDSAIAERNNAIMERDNAIATLQY 88 9999998878888732223332335555.....************************************************************ PP GAGA_bind 87 vensla......salpvgvqvlsgtksidslqqlsepqled 121 +en+++ s +p+g ++ +g++++++ qq++++q ++ Migut.B00488.1.p 89 RENAINssnnnmSPCPPGLSIPRGVQHMHQPQQHQQQQQQH 129 ***9988888888899*************999965554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 4.8E-15 | 1 | 123 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 9.7E-12 | 1 | 151 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MDDSGHRENG RHKPPQGQWL MQQQPSMKQI MGFMAERDAA IQERNLAISE KKTALAERDM 60 AILQRDSAIA ERNNAIMERD NAIATLQYRE NAINSSNNNM SPCPPGLSIP RGVQHMHQPQ 120 QHQQQQQQHI TSSSSSDHWA KHGTNRYITI K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00488.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856048.1 | 6e-80 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 1e-53 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A022Q3T7 | 2e-94 | A0A022Q3T7_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B00488.1.p | 1e-108 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 6e-49 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00488.1.p |