PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00479.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 373aa    MW: 40604.8 Da    PI: 5.7215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00479.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.57.1e-232370249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      + en+sn qvt+skRr+g++KKA+EL++LC+ae+++++fs+ +k+y +
  Migut.B00479.1.p 23 KMENQSNLQVTYSKRRAGLFKKASELCTLCGAEASIVVFSPADKVYCF 70
                      679******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-311473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.7311474IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-261587IPR002100Transcription factor, MADS-box
CDDcd002655.57E-301587No hitNo description
PRINTSPR004042.3E-171636IPR002100Transcription factor, MADS-box
PfamPF003191.8E-222370IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-173651IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-175172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSSSKGAPST RKSKGRQKVK MEKMENQSNL QVTYSKRRAG LFKKASELCT LCGAEASIVV  60
FSPADKVYCF GHPNVQTVLD KFDADSGIIN NNINNNNNIN NNNINNNDDD NIIDNAATAR  120
VLEAFRNSAI RKLNVRLTRA EVALRAEKRR TEELEAIKKT GQAQKWFPTG FDDFNYDQLS  180
ALKESILDFR KNLDAKLHED MLRVSDPNPP MLHQENPNIN NNINNINNII NNINNNDDDD  240
DYEGGFLFNP NPAFNNAPFP VGPNDFFAHG VGGINGGMAI NDGFVVDNPA AANININPMI  300
ASGSNNNGGF VPFDNYGGGN NAMLFGGGAA NHGYTAASSS RSVPNYDPST ANIGSTSFGG  360
YNNNMGYDPR MF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00479.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836716.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A022RB350.0A0A022RB35_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-39AGAMOUS-like 62