PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00434.2.p | ||||||||
Common Name | MIMGU_mgv1a013924mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22141.7 Da PI: 8.2288 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 63.1 | 7.2e-20 | 8 | 98 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++p+++r+ ++ r+ +Pv+Gavg++++++++l+q+ Migut.B00434.2.p 8 SCNGCRILRKGCNENCILRQSLqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPQSQRT---------SCGRTVNPVNGAVGLMSTGNWHLCQS 93 6**********************************************************6.........799*********************** PP DUF260 91 kaela 95 ++e++ Migut.B00434.2.p 94 AVETV 98 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.589 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-16 | 8 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLERISMSCN GCRILRKGCN ENCILRQSLQ GIESPQAQAN ATVFVAKFFG RAGLMSFLSS 60 VPQSQRTSCG RTVNPVNGAV GLMSTGNWHL CQSAVETVLD GGVPRCLPEY SPQSSPELDE 120 GFEDHNNGLC MNSRDSNIRV NNNNGGLTAA RMTSRGRREN SRSASPPSDE SETTTLESGF 180 IFHQRHQNHH GNGNGTKLLR LFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00434.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836780.1 | 1e-146 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-48 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A022RFA8 | 1e-140 | A0A022RFA8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00434.1.p | 1e-145 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-50 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00434.2.p |