PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00434.1.p | ||||||||
Common Name | MIMGU_mgv1a013924mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23191 Da PI: 8.0119 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.4 | 1.2e-29 | 8 | 107 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++l+ Migut.B00434.1.p 8 SCNGCRILRKGCNENCILRQSLqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPQSQRTSLFQSLLFEACGRTVNPVNGAVGLMSTGNWHLC 100 6******************************************************************************************** PP DUF260 89 qlkaela 95 q+++e++ Migut.B00434.1.p 101 QSAVETV 107 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.625 | 7 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-26 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLERISMSCN GCRILRKGCN ENCILRQSLQ GIESPQAQAN ATVFVAKFFG RAGLMSFLSS 60 VPQSQRTSLF QSLLFEACGR TVNPVNGAVG LMSTGNWHLC QSAVETVLDG GVPRCLPEYS 120 PQSSPELDEG FEDHNNGLCM NSRDSNIRVN NNNGGLTAAR MTSRGRRENS RSASPPSDES 180 ETTTLESGFI FHQRHQNHHG NGNGTKLLRL FI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00434.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836780.1 | 1e-156 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 3e-57 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A022RFA8 | 1e-150 | A0A022RFA8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00434.1.p | 1e-155 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-59 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00434.1.p |