PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00404.2.p
Common NameLOC105957510, MIMGU_mgv1a001571mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HB-PHD
Protein Properties Length: 794aa    MW: 87523.5 Da    PI: 4.4523
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00404.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.21.2e-12697741953
                       HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +  +++L   F +n+yp+++++e LA++lg+t rqV+ WF N R 
  Migut.B00404.2.p 697 EATTQRLYVSFSENQYPQRAAKENLANELGITVRQVSKWFENARW 741
                       56789999**********************************995 PP
2PHD39.41.4e-13331386151
                       SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
               PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                       +C+ Cg+     +++++lCdg C++ fH+ Cl+++l +e++p g   wlC+ C++k
  Migut.B00404.2.p 331 FCAKCGSkeLPLDNDIILCDGaCERGFHQFCLDPPLLKEQIPPGdeGWLCPGCDCK 386
                       6999**954444********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-14321389IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-12328386IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.95329386IPR019787Zinc finger, PHD-finger
CDDcd155043.72E-27331383No hitNo description
PfamPF006285.0E-11331386IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-9331384IPR001965Zinc finger, PHD-type
PROSITE patternPS013590332383IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.6E-13676740IPR009057Homeodomain-like
SuperFamilySSF466893.46E-12682746IPR009057Homeodomain-like
PROSITE profilePS5007113.475686746IPR001356Homeobox domain
SMARTSM003891.4E-9688750IPR001356Homeobox domain
CDDcd000861.18E-10689740No hitNo description
PfamPF000464.0E-10697741IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MGGTDNKTHE LEPNVIEQSK SSEVLTRDPN YNGSIPMECD RLVTETVEQK EVTAPQTIVN  60
VLVSTVEISD KTTEIQPKQE DISLNAGAEK QEPLLENVEE LPGFENTEVA SNGSTNHENL  120
GTPLGAASDD PNCGKVEPVQ IDFTIDSGQI DNEDGAASGQ SRKRKSRVKG PVISSWSLRS  180
KSQERPKAPE PDETVKADET VKADETVKAD ETVKAGSSNG EKKKKGRKKK QVKNNTTVNE  240
YSRTRTHLRY LLHRIKYEQS LIDAYCTEGW KGQSLEKLKP EKELQRAKSH ILRYKLRIRA  300
LFENLDLSLA VGKLPTSLFD SQGEIDSEDI FCAKCGSKEL PLDNDIILCD GACERGFHQF  360
CLDPPLLKEQ IPPGDEGWLC PGCDCKVDCI DMLKDFQGTK ISILDSWEKI FPEAAAAASG  420
KKLDDCSGSS SDDAEDDDYD PDKPDADENN VDENNADEKV EGDESSSDES DYFSASDGVA  480
APLNNDKYEG LPSEDSEDDD FDPSAPDEDE QVKQDSSGSD FTSDSEDLDA LLEENATEPG  540
QDPGQTADQK QPSTGSNDEN PKVGRMKRTS LKDELVYLME TDAQPVAGKR QVKRLDYKKL  600
LDETYGNASS DSSDEDFDDG TTRKRRKIDP EKSERKSRDK TPITKSNTNT TDENQKASKR  660
SSKRPRKKVA DGGTNESPAN NGSSTTSKKR PLKRLGEATT QRLYVSFSEN QYPQRAAKEN  720
LANELGITVR QVSKWFENAR WSYNHRPQTE SNSTEKKPPE PQTSVGTEGN NSNQTLGLEN  780
VVNNASGENS GIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00404.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836886.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_012836887.10.0PREDICTED: homeobox protein HAT3.1
TrEMBLA0A022RBH90.0A0A022RBH9_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-80Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain