PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00332.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 324aa    MW: 36996 Da    PI: 8.1373
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00332.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-14151240198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k ++ps+v++  +l lpkkf++ +  +  e++ ++l de gr+ +  +   +++    l++GW+ F   ++L  gD ++F l++  +f  +
  Migut.B00332.1.p 151 FVKCMLPSNVSQGFWLHLPKKFCTVNLPN--EDTPVVLVDELGREHTTSYLLGRNG----LSAGWRAFSMKHKLLKGDLLIFLLTEPCKF--K 235
                       89*********************777433..5567***************666666....9**********************9877777..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++r
  Migut.B00332.1.p 236 VHIVR 240
                       88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-21146242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-18148240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-22149240No hitNo description
PROSITE profilePS5086311.575151242IPR003340B3 DNA binding domain
SMARTSM010191.8E-14151242IPR003340B3 DNA binding domain
PfamPF023628.2E-12151240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MYAQGNVSKK LLLTIAKEIE ETRRTSTVMK TNDEEKLKGK LHETQYCTSD SDSDFCPEDP  60
TTSSSQERNK RKRKERTKMQ FESTSMGVSA KSERLKSDKE VCSDNSKKPQ SERKRTRDCD  120
IYEDEEAKRS VMQRAAELLA RLAKEYNLPS FVKCMLPSNV SQGFWLHLPK KFCTVNLPNE  180
DTPVVLVDEL GREHTTSYLL GRNGLSAGWR AFSMKHKLLK GDLLIFLLTE PCKFKVHIVR  240
VNDIEVLFAA LCLMDLRFSC EGNDSDSEKK DKRKRRRRNY VDPALFEMLM PSEKVEERDV  300
PKSSSSNSDG FSSEVIEGSE STD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268276KKDKRKRRR
2271276KRKRRR
3271277KRKRRRR
4272276RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00332.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836958.10.0PREDICTED: B3 domain-containing protein At3g19184-like
RefseqXP_012836959.10.0PREDICTED: B3 domain-containing protein At3g19184-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-22B3 family protein