PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00228.1.p | ||||||||
Common Name | MIMGU_mgv1a007881mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 43704.9 Da PI: 5.9428 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.6e-10 | 228 | 275 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Migut.B00228.1.p 228 SHSLAERVRREKISERMKYLQDLVPGC----DKITGKAGMLDEIINYVQSLQ 275 8*************************9....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-17 | 222 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.29E-10 | 222 | 279 | No hit | No description |
PROSITE profile | PS50888 | 15.637 | 224 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-17 | 224 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-7 | 228 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-9 | 230 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MNRGGLPEML HCLHAAASEG ADISVLDRQR SRHKWQQDQL LIQQHHQQNQ PLPYFSDNSD 60 QLGGVFMSLN GDHGGLHELL LGGAMKPDPG LENGWGGDLV GGLNYASELE KNYAIQRTVS 120 CPPDVAAAKI AAQEAALSSA AGRESSKKRK ADKTQTLKVI AEEKTEEKKM KECFEEDSKI 180 TEQNSNNNNK SSTITTATNS KDNNNNSKEF PKTDYIHVRA RRGQATDSHS LAERVRREKI 240 SERMKYLQDL VPGCDKITGK AGMLDEIINY VQSLQRQVEF LSMKLAVINP RLDFDVENYH 300 TKQNFTGCSS SVPTIGTPSE MMDQSLLQFN SLGQEVSGSI LEMLVNPMDV SLRRTISAPV 360 SVPHPFLDSS SLNQQIQHVT WEDEFQNIYN ME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00228.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837058.1 | 0.0 | PREDICTED: transcription factor HBI1 | ||||
Swissprot | Q8GY61 | 5e-57 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A022RFX4 | 0.0 | A0A022RFX4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00228.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6538 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 1e-54 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00228.1.p |