PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00196.1.p | ||||||||
Common Name | MIMGU_mgv1a018731mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | SRS | ||||||||
Protein Properties | Length: 125aa MW: 12603.6 Da PI: 4.1512 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 78.5 | 1.9e-24 | 4 | 55 | 102 | 153 |
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P evs +avfrcvrvss+d+ +++aYqt+vsigGhvf GiLydqG+e Migut.B00196.1.p 4 EGDFPGEVSFPAVFRCVRVSSIDNVVDQYAYQTSVSIGGHVFTGILYDQGAE 55 567***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.4E-22 | 5 | 55 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 3.1E-25 | 7 | 53 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
GLEEGDFPGE VSFPAVFRCV RVSSIDNVVD QYAYQTSVSI GGHVFTGILY DQGAEPEGTV 60 NYVTGGSSSS GGGGGGIGLL QQHNFVGGGG GGAAGNTGTT PSSYPTPSPF YAFTSSQFFQ 120 YPKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00196.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836757.1 | 4e-82 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A022RBX9 | 3e-80 | A0A022RBX9_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B00196.1.p | 2e-81 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 2e-21 | SHI-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00196.1.p |