PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00182.1.p | ||||||||
Common Name | LOC105957695, MIMGU_mgv1a009692mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 335aa MW: 36939.3 Da PI: 6.4019 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58 | 1.3e-18 | 252 | 285 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR gp g+ktLCnaCG+++++ + Migut.B00182.1.p 252 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 285 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.9E-77 | 14 | 326 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.123 | 246 | 282 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.9E-16 | 246 | 296 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-14 | 249 | 309 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.7E-14 | 249 | 283 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.84E-13 | 251 | 308 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 252 | 277 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.8E-16 | 252 | 285 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MECIEARALK SSFLSQMAMK ANSQVFYNDD VWCLTGINSG GGAADDFPDV DELLNLDFPE 60 KEFQEVLCFS QEDDDVTHKE GSHHSSTSTF SGADDFDSLS AGELPVPSDD LENLEWLSQF 120 VDDTTSSGLS LLCPAGSFTE RAEPNFANRV VTVNRPLRKI QAPFLLTPIP VKARSKRSRS 180 NGRPWSLSSP PLSSGDSSST TSSSYGSSIL SPFLFTTPVR ETEWFSTGEK PAKKLKRKPA 240 ETETGSISGR RCTHCQVQKT PQWRTGPLGP KTLCNACGVR FKSGRLFPEY RPAFSPTFSH 300 EVHSNSHRKV LEMRRRKETV EFPEPGSPLM VQSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00182.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837106.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
TrEMBL | A0A022RDN2 | 0.0 | A0A022RDN2_ERYGU; GATA transcription factor | ||||
STRING | Migut.B00182.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 3e-54 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00182.1.p |
Entrez Gene | 105957695 |