PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.B00065.1.p | ||||||||
Common Name | MIMGU_mgv1a026641mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 192aa MW: 21834.1 Da PI: 9.8504 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.6 | 2.6e-16 | 127 | 162 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C+nCg ++ Tpl+R+gp g++tLCnaCGl+++ kg Migut.B00065.1.p 127 CTNCGIISndTPLMRKGPTGPRTLCNACGLFWANKG 162 *******999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 11.444 | 8 | 43 | IPR010399 | Tify domain |
SMART | SM00979 | 3.1E-4 | 8 | 43 | IPR010399 | Tify domain |
Pfam | PF06200 | 8.6E-7 | 12 | 41 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.0E-14 | 64 | 106 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.094 | 64 | 106 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.317 | 121 | 170 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-11 | 121 | 174 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-12 | 123 | 170 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-16 | 126 | 168 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.02E-14 | 126 | 170 | No hit | No description |
Pfam | PF00320 | 9.8E-14 | 127 | 162 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 127 | 154 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASDEVPPNV PPHRITLSFH DRVFVFDDVP PQKVQIALLL LGGYELGCDT NGSTSQNKNK 60 CPKREEFINR YRSKKMKRCF EKKIRYNVRQ EVAMRMQRKR GQFAPKKIEE EASMSPNLSD 120 HEDNIACTNC GIISNDTPLM RKGPTGPRTL CNACGLFWAN KGFMRDVSRR FGRNEMLPAY 180 QVAYNGGKTE L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.B00065.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088777.1 | 6e-60 | GATA transcription factor 25-like | ||||
Swissprot | Q5Z4U5 | 3e-46 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
Swissprot | Q9LRH6 | 3e-46 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A022RE15 | 1e-139 | A0A022RE15_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B00065.1.p | 1e-142 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19793 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-48 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Migut.B00065.1.p |
Publications ? help Back to Top | |||
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