PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.A01192.1.p | ||||||||
Common Name | MIMGU_mgv1a025711mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24599 Da PI: 4.4969 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.1 | 3.9e-12 | 11 | 55 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +++ GVr k++ ++ AeIrd+++ +kr++lg+f t+eeA + ++ Migut.A01192.1.p 11 TKFVGVR--KRNSKYIAEIRDFRK---KKRVWLGTFNTPEEASFVYLSMK 55 6899**7..5567********843...6**************87766555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.14E-13 | 11 | 51 | No hit | No description |
Pfam | PF00847 | 1.2E-5 | 11 | 47 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.85 | 12 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-13 | 12 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-5 | 12 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-10 | 12 | 58 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MADLKKDERQ TKFVGVRKRN SKYIAEIRDF RKKKRVWLGT FNTPEEASFV YLSMKREIDE 60 YKAKLFAKKI PSQNPSSTLD SPSHVQLSDK NDVSDGTSSR SAAVLEEQDS EENEDSDETR 120 SRSAAPGEKE QVSGENEVSD GTRSAAAMEG QVSGKKEVSD ETSSRSAAAV EGKDEVCGYQ 180 DDKLGFINGV QVFDEYGILV GEFSHIDDLS IICQPEDCAS IF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 16 | 34 | RKRNSKYIAEIRDFRKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.A01192.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857157.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A022Q396 | 1e-158 | A0A022Q396_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5075 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-12 | ERF domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.A01192.1.p |