PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A01101.1.p | ||||||||
Common Name | LOC105954339, MIMGU_mgv1a011666mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 30217.4 Da PI: 9.9592 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+t Ed ll ++++++G g+W++ ++ g+ R++k+c++rw +yl Migut.A01101.1.p 14 RGPWSTKEDTLLSNYIQLHGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l Migut.A01101.1.p 67 RGNISEDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.911 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.94E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.482 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.24E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGRSPCCSKV GLRRGPWSTK EDTLLSNYIQ LHGEGQWRSL PKNAGLLRCG KSCRLRWMNY 60 LRPGIKRGNI SEDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNHWNT HLLKKLKGIQ 120 HRAAKSTNNN TKKTTVKKQK KKKVAAAPPP PPPPEVKVTT TQAEGIINTG TTTDQPIKPK 180 PIRVSAVFSR TNSYDSLASN WTTSSSEAAA AAAAEVVSFV PWPPMFQLGG DGVCYGGGEE 240 DDFLAGGFIL PLLNHHEGDV NTLDQVYDEY LQLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A01101.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833468.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | O22264 | 2e-60 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | A0A022RJS9 | 0.0 | A0A022RJS9_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-61 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.A01101.1.p |
Entrez Gene | 105954339 |