PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A01063.1.p
Common NameMIMGU_mgv1a009293mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 351aa    MW: 38621.4 Da    PI: 7.6456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A01063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.3e-3373177199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                       f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v+F++  g+ 
  Migut.A01063.1.p  73 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSSNNEKGLLLNFEDRNGKQWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVTFQRGlGDf 165
                       89****************************77788999*************************************************777999 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l++ ++r+
  Migut.A01063.1.p 166 GKDRLFINWRRR 177
                       999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-4264181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-3170179IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-2771160No hitNo description
PfamPF023625.3E-3173177IPR003340B3 DNA binding domain
PROSITE profilePS5086315.6573178IPR003340B3 DNA binding domain
SMARTSM010191.8E-2473178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNFMSGRSGF NYEERSSSSS SSGFPLNYCS YGGGGGGGGA PPEFNNYGNG GEEEYSGGNH  60
TAVAAMVERE HMFDKVVTPS DVGKLNRLVI PKQYAEKYFP LDSSNNEKGL LLNFEDRNGK  120
QWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDTVTFQR GLGDFGKDRL FINWRRRPDA  180
PPPPVSSSSS IIFPHSHFSF HSAYSPSNYS NWNSSNPLFY QQSPNNYPGI VNGNPCPRPG  240
SIMYLQRPGS FSPGGGWAAA AQPHTEAQRG GMVFDSVPVV QVANNSNNNS NGSGAAKRMR  300
LFGVTMDCPI SEATADSEII IHPDFDSLNY SNNYHNNYKG KDSLSLDLDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-65661781114B3 domain-containing transcription factor NGA1
5os9_B1e-65661781114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A01063.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858928.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827994e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A022PZ150.0A0A022PZ15_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]