PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.A01062.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 489aa MW: 57682.6 Da PI: 9.1691

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.A01062.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.7	6.9e-12	13	90	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY e+Ak+ GF+v k++++k+ +ge + ++C k+ k++ +k+ +r++C a++ k+ dg+w+v++++ HnHel+ Migut.A01062.1.p 13 FYLEHAKHRGFDVIKRTTRKT-ADGENKYLLMTCDKSRKTALQKTM----------KRVDCPARVSAIKQCDGNWMVSSVVAGHNHELT 90 9************999998.88889999999999887655..........9*****99999**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-9	13	90	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.854	414	452	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-4	427	454	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.2E-4	428	450	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MYIISGHRNL FWFYLEHAKH RGFDVIKRTT RKTADGENKY LLMTCDKSRK TALQKTMKRV 60 DCPARVSAIK QCDGNWMVSS VVAGHNHELT SDISILMPAH INISTNMKRQ LEANDIAGIM 120 PCKSIRLAYV QSGDCRNFIE GRRKLRLGTC NGEAIRKLFW GLQKWDTNFI YSLDIDDHGR 180 LCNMLWIYSR CRAAYAEFND IWLGCALVTH EDGESFKWFF KHWLEAMDDV HPNTIHRYCL 240 WHIMSKVPQK FKGVAEYNNV VRGFKRIVYE SITSETFELK WGWVPCYLNH VFGAGMLWTQ 300 RSEGMYAFNR YIHSRSTLKQ FVEQYELAMA NKIQKEFIAK NESKNMLILC LSQFPWERQF 360 QSAYTNNLFK KVQEEISRVL YCHIVVEQYD QTSGVEKISV HAKSRVNEFY TRDFTFIVDY 420 TTDGEYFSCN CKKFEFMGLL CCHILFVLRK KDIQSVSKRY LLRRWMKDIY RRHSSIFFAG 480 GYPHMPEE*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MYIISGHRNL FWFYLEHAKH RGFDVIKRTT RKTADGENKY LLMTCDKSRK TALQKTMKRV  60
DCPARVSAIK QCDGNWMVSS VVAGHNHELT SDISILMPAH INISTNMKRQ LEANDIAGIM  120
PCKSIRLAYV QSGDCRNFIE GRRKLRLGTC NGEAIRKLFW GLQKWDTNFI YSLDIDDHGR  180
LCNMLWIYSR CRAAYAEFND IWLGCALVTH EDGESFKWFF KHWLEAMDDV HPNTIHRYCL  240
WHIMSKVPQK FKGVAEYNNV VRGFKRIVYE SITSETFELK WGWVPCYLNH VFGAGMLWTQ  300
RSEGMYAFNR YIHSRSTLKQ FVEQYELAMA NKIQKEFIAK NESKNMLILC LSQFPWERQF  360
QSAYTNNLFK KVQEEISRVL YCHIVVEQYD QTSGVEKISV HAKSRVNEFY TRDFTFIVDY  420
TTDGEYFSCN CKKFEFMGLL CCHILFVLRK KDIQSVSKRY LLRRWMKDIY RRHSSIFFAG  480
GYPHMPEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.A01062.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021688016.1	1e-178	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A022PUK3	0.0	A0A022PUK3_ERYGU; Uncharacterized protein
STRING	Migut.A01062.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-61	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Migut.A01062.1.p