PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A01055.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 675aa MW: 75205.8 Da PI: 6.5247 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.2 | 1.4e-30 | 79 | 163 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ +r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++ke++++r++++s +++fdqlea Migut.A01055.1.p 79 RWPRQETLALLQIRSEMDAVFRDATLKGPLWEQVSRKLAELGYQRNAKKCKEKFENVQKYYKRTKETRGGRHDGKS--YKFFDQLEA 163 8*********************************************************************966666..*******85 PP | |||||||
2 | trihelix | 103 | 2.3e-32 | 416 | 501 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k evlaLi++r+ +e+r+++ g k+plWee+s++m+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+++tcpyf++l+ Migut.A01055.1.p 416 RWPKAEVLALIQLRSGLEHRYQEtGLPKGPLWEEISARMKGIGYNRNAKRCKEKWENINKYFKKVKESDKKR-PEDTKTCPYFHELD 501 8*********************846789*******************************************8.9999********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1 | 76 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.551 | 78 | 136 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.02E-25 | 78 | 143 | No hit | No description |
Pfam | PF13837 | 2.5E-21 | 78 | 164 | No hit | No description |
SMART | SM00717 | 0.0014 | 413 | 476 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-4 | 415 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 9.0E-23 | 415 | 503 | No hit | No description |
PROSITE profile | PS50090 | 7.015 | 415 | 474 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.08E-26 | 415 | 481 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MQHQQQGGGG GGGTAAGGGG GGGAGEMNFG TDEHQKLGDL GIAEAASPIS SRPPAANNNF 60 EEMMRVTAAE GGGGGSGNRW PRQETLALLQ IRSEMDAVFR DATLKGPLWE QVSRKLAELG 120 YQRNAKKCKE KFENVQKYYK RTKETRGGRH DGKSYKFFDQ LEALNTSAPS TTTTSENLVH 180 HHHHHILPIT TSLPPVLREP PSAPPPPPPP LFSTVGVSFS SSSDEEQEDD EEMEAELGDD 240 INLMMRRKRK RRSGGNSRSS SSEERMMEFL EGVVKQVMQK QESMQQKFLH AIEKREHDRM 300 IREEAWKRQD MARLARQQDL MAQERSISAS RDAAIVAFLE KITGQKVNLP HHNPTPPPPP 360 PPTTNNYSMQ QLMIPTDKIT ENSSREMVVA VVPPEKQIQQ QHDQLITTGG TGSSSRWPKA 420 EVLALIQLRS GLEHRYQETG LPKGPLWEEI SARMKGIGYN RNAKRCKEKW ENINKYFKKV 480 KESDKKRPED TKTCPYFHEL DELYRKKVLG NTSGTTTTTT ILGGAAAFPE QERHQQDVVG 540 MMSSEDNKNE LQASSTLFGE QSQANIGGGV KQPEAMLKKQ HNQQGQGIIM MENRCSNKIN 600 GSINNGDDDL DRDMINDDEY SYGDENEEEV DAKTTDEEMK MAYKIQFQRQ NNNNNVSSSG 660 GETPSSNSFM AMVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 250 | RRKRKR |
2 | 245 | 251 | RRKRKRR |
3 | 246 | 251 | RKRKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A01055.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858955.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
TrEMBL | A0A2G9H855 | 0.0 | A0A2G9H855_9LAMI; Transcription factor GT-2 | ||||
STRING | Migut.A01055.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19791 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-68 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.A01055.1.p |