PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00803.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 316aa    MW: 33799.5 Da    PI: 4.7449
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00803.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.24.8e-37291202102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k+ll
  Migut.A00803.1.p  29 FLTKTYQLVEDPSIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFKRGEKSLL 112
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Migut.A00803.1.p 113 RDIQRRKI 120
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-6025118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.27E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-212952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-216779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-218092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSEGTTGGG GGGGGSSGGE SHRSVPTPFL TKTYQLVEDP SIDDLISWNE DGTTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NDGFKRGEKS LLRDIQRRKI  120
SAGAGAGTPL NAAVIANAQS VTVALAPAAA IQISPANSGD EQVLSSNSSP AAIAVVTAAA  180
PLRACSSTTT AEILEENERL RRENAQLSQE LSRLKSLCGN IFTMMSSYAT NQGERASPEG  240
RSAELTPEAE TTAAEEDGCA AVNEEVEEMC PRIFGVPIGV KRLKKSSDDQ IHPRGFDCKS  300
EPSDPGSSQE FDDKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252912220124Heat shock factor protein 1
5d5u_B9e-262911829129Heat shock factor protein 1
5d5v_B9e-262911829129Heat shock factor protein 1
5d5v_D9e-262911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00803.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846526.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D32e-90HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A022QTB10.0A0A022QTB1_ERYGU; Uncharacterized protein
STRINGMigut.A00803.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-77HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]