PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00649.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 19704.8 Da    PI: 9.7815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00649.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.1e-201051243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      +i n   rqvt++kRr+g++KKAeELS+LC+a++ ++i+ss+
  Migut.A00649.1.p 10 KIANVAARQVTLTKRRKGLFKKAEELSILCEAQIGLLIISSS 51
                      799999****************************99999986 PP
2K-box36.42.2e-1378168797
             K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       k+l+e ++ s qq ++  +ke+ +  +++R++  e+L+ Ls+ eLq Leq +e +l++i +kK+e ++++i++lq+k  +l e nk Lr++
  Migut.A00649.1.p  78 KNLDELEQPSEQQLVRDSNKEVAEKSHQLRRMREEELQGLSIDELQCLEQSMEAGLRRITQKKEEKIMREINQLQEKRMQLMEGNKLLRQQ 168
                       45666666777777777777888878999***********************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-25164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.287152IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-24279IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-14323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-181054IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-143859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.99685168IPR002487Transcription factor, K-box
PfamPF014862.4E-1092168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGREKIKMEK IANVAARQVT LTKRRKGLFK KAEELSILCE AQIGLLIISS SSNTPIKFFN  60
YATTSMKDII ERYNLHSKNL DELEQPSEQQ LVRDSNKEVA EKSHQLRRMR EEELQGLSID  120
ELQCLEQSME AGLRRITQKK EEKIMREINQ LQEKRMQLME GNKLLRQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-16177173MEF2 CHIMERA
6byy_B4e-16177173MEF2 CHIMERA
6byy_C4e-16177173MEF2 CHIMERA
6byy_D4e-16177173MEF2 CHIMERA
6bz1_A5e-16177173MEF2 CHIMERA
6bz1_B5e-16177173MEF2 CHIMERA
6bz1_C5e-16177173MEF2 CHIMERA
6bz1_D5e-16177173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00649.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854196.14e-88PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY63e-63JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A022Q8289e-87A0A022Q828_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]