PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.A00611.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 676aa MW: 75601.8 Da PI: 6.2147 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.2e-24 | 133 | 234 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + Migut.A00611.1.p 133 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 223 99****************************9555555679************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ Migut.A00611.1.p 224 TGELRVGVRRH 234 999******97 PP | |||||||
2 | Auxin_resp | 85.4 | 1.2e-28 | 259 | 337 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+ t++ F v+Y+Pr+ s+F++ ++k+++al++ + vG +fk +fe++ds+err+sGtv+gv+d++p +W++SkWr Migut.A00611.1.p 259 ASHAVLTQTLFVVYYKPRT--SQFIIGLNKYLEALDHDFGVGVKFKKRFEGDDSPERRFSGTVIGVEDISP-HWEDSKWRTF 337 68999*************6..9***********************************************99.********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-43 | 123 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-41 | 124 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.23E-21 | 131 | 233 | No hit | No description |
PROSITE profile | PS50863 | 12.351 | 133 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-22 | 133 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-22 | 133 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-26 | 259 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.7E-7 | 553 | 600 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.06E-12 | 562 | 640 | No hit | No description |
PROSITE profile | PS51745 | 26.538 | 564 | 645 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.8E-6 | 610 | 648 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 676 aa Download sequence Send to blast |
MANRSSFSQQ HHQPNSVSTE GSWGKDSLYE ELWKACAGPL VDVPKVGERV YYFPQGHMEQ 60 LEASTNQELN QRIPMFNLPS KILCRVFDIK LQAEQDTDEV YAQITLMPEA DQTEPRSPDS 120 SPDEPPRPSV HSFCKVLTAS DTSTHGGFSV LRKHANECLP PLDMNQQTPT QELIAKDLHG 180 TEWHFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDSFVFL RGETGELRVG VRRHARQQSS 240 MPSSVISSQS MHLGVLATAS HAVLTQTLFV VYYKPRTSQF IIGLNKYLEA LDHDFGVGVK 300 FKKRFEGDDS PERRFSGTVI GVEDISPHWE DSKWRTFKVQ WDEPASIQRP ERVSPWEIEP 360 FVASNPTNTI QPLTMKHKRP RPLVEIPVPE TMTTSPLSPA WNLTQDSHKI NRVSDGLRSN 420 HSTNSLNKQT DAPSDGGQQF SLQINASPNM AAAEETDESK SASAWSVITN ISAPSSGKQG 480 NSHNNEGTKS DTIASCRLFG FDLKRPSVVT LCDNNSPFKS VDVSNDLLCS GDSDQKSGVS 540 KELKQDQLQT LSKEVQNRQI NSSRSRTKVQ MQGVAVGRAV DLTTLNGYND LINELEEMFE 600 IKGELRPRNK WEIVFTDDEG DMMLVGDDPW PEFCNMVRRI LICSSQDTKK MKASKLPLPT 660 AECEATGLNL ECIED* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-178 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-178 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-178 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-178 | 26 | 361 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 377 | 381 | KRPRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.A00611.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM480497 | 2e-33 | AM480497.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X102651.45, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854189.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A022Q6Q9 | 0.0 | A0A022Q6Q9_ERYGU; Auxin response factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.A00611.1.p |