PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00408.1.p
Common NameMIMGU_mgv1a020547mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 367aa    MW: 39335.2 Da    PI: 5.2402
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00408.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.2e-171759345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      ien+   + tfskRr g+ KKA+ELS+LC++++ +iifs+t++
  Migut.A00408.1.p 17 IENQDDLYATFSKRRLGLYKKASELSTLCGVDIGIIIFSPTDN 59
                      999999*********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.278767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23779IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-23766IPR002100Transcription factor, MADS-box
CDDcd002654.99E-30879No hitNo description
PRINTSPR004042.5E-13929IPR002100Transcription factor, MADS-box
PfamPF003199.2E-211763IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAGRQTRGRQ RIPIRLIENQ DDLYATFSKR RLGLYKKASE LSTLCGVDIG IIIFSPTDNP  60
FSFFHPSMES VIDRFRNPNQ PLSDYARVVE AHTRARIDNL NRRLDEIHEE KDRLKEREKE  120
LDEIDRNRPK GWWEDTPIES LSPEQVLEWK AWFRAFKVKI QNRISELNNG ASTSGAAAAA  180
AADEAAAAAP PPTGGEIVPG MFAQNFDFPP GPSSSTYSPV AFGDHQFATT QYFDAPPYAS  240
GGASGSGSGG GGGGQYFVTQ AGEGPSGSGS GQFSVPYNFG APPFGAEVPS ASAAGAAGGS  300
GGGGQFPPMQ YNYFPPPPQQ PDHDNQNQDP TSATVGEYSI QYNYIPRWGQ DPSAGGGAGP  360
SHRGKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00408.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855808.10.0PREDICTED: MADS-box transcription factor 21-like
TrEMBLA0A022Q0G90.0A0A022Q0G9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-27AGAMOUS-like 62