PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A00406.1.p | ||||||||
Common Name | MIMGU_mgv1a023642mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 368aa MW: 39428.2 Da PI: 5.0776 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.4 | 3.2e-17 | 17 | 59 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ien+ + tfskRr g+ KKA+ELS+LC++++ +iifs+t++ Migut.A00406.1.p 17 IENQDDLYATFSKRRLGLYKKASELSTLCGVDIGIIIFSPTDN 59 999999*********************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.278 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-23 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-23 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.04E-30 | 8 | 79 | No hit | No description |
PRINTS | PR00404 | 2.5E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-21 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-13 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MAGRQTRGRQ RIPIRLIENQ DDLYATFSKR RLGLYKKASE LSTLCGVDIG IIIFSPTDNP 60 FSFFHPSMES VIDRFRNPNQ PLSDYARVVE AHTRARIDNL NRRLDEIHEE KDRLKEREKE 120 LDEIDRNRPK GWWEDTPIES LSPEQVLEWK AWFRAFKVKI QNRISELNNG ASTSGAGAAA 180 AADAAAAAVP PPTTGGEIVP GMFAQNYDFP PGPSSSSYSP VAFGDHQFAT TQYYDAPPYA 240 SGGASGSGSG GGGGQYFVTQ AGEGPSGSCS GQFSVPYNFG APTFGAEGSS AAAAAGAGGS 300 AGGGQFPPMQ YNYFTPPPPQ QPDLDNQNQD PTSATVGEYS IQYNYIPRWG QDPSSGGGAG 360 PSHRGNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A00406.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855808.1 | 0.0 | PREDICTED: MADS-box transcription factor 21-like | ||||
TrEMBL | A0A022Q336 | 0.0 | A0A022Q336_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-27 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Migut.A00406.1.p |