PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A00403.1.p | ||||||||
Common Name | LOC105975347, MIMGU_mgv1a008870mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | CO-like | ||||||||
Protein Properties | Length: 361aa MW: 39572 Da PI: 5.2997 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 9.7e-08 | 11 | 42 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 ++C+ ++ ++ fC+ ++ +lC +C ++H Migut.A00403.1.p 11 KVCDSCKASPAAVFCRADSAFLCMTCDAKIHA 42 79*****************************5 PP | |||||||
2 | zf-B_box | 27.1 | 8.5e-09 | 53 | 97 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ +++ C+ + lC+ C +H+ H++ p Migut.A00403.1.p 53 LWVCEVCEQAPATVTCKADAASLCAACDRDIHSAnplarrHERLP 97 689*****************************6578888888765 PP | |||||||
3 | CCT | 69.6 | 8e-24 | 288 | 332 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k++e Migut.A00403.1.p 288 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRSE 332 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.0E-11 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.58 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.8E-6 | 11 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.23E-8 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.281 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.9E-7 | 53 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-8 | 54 | 97 | No hit | No description |
SMART | SM00336 | 5.4E-9 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.857 | 288 | 330 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.0E-17 | 288 | 330 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGAETWSLTA KVCDSCKASP AAVFCRADSA FLCMTCDAKI HAANKLASRH ARLWVCEVCE 60 QAPATVTCKA DAASLCAACD RDIHSANPLA RRHERLPAVP FYDSASAAKS SPSPSDATAA 120 AEQECSEEEA EAASWLLPNK FEEESGSPEY KSADYLFTDM DPYNLDLDLI SGEQKPQLII 180 TNDEQQQHKH YSSDGVVPVQ TKTEFGSTHY PGPVVDGFPT YEMDYPGAPK PFMYNFTSQS 240 ISQSVSSSSM EVGVVPEDHN AAMADISDST TFACKNEPPP VPVSGVDREA RVLRYREKRK 300 NRRFEKTIRY ASRKAYAETR PRVKGRFAKR SEMIEVDSLN IDASSANRHD SSSYSVVPSF 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A00403.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855991.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 7e-93 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A022Q274 | 0.0 | A0A022Q274_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-87 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.A00403.1.p |
Entrez Gene | 105975347 |