PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00330.1.p
Common NameMIMGU_mgv1a023084mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 194aa    MW: 20458.4 Da    PI: 4.4084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-182272155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ykGVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  Migut.A00330.1.p 22 KKYKGVRKRK-WGKYVSEIRLPNS---RDRIWLGSYDTAEKAARAFDAALFCLRG 72
                      59*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-282282No hitNo description
PROSITE profilePS5103221.1672380IPR001471AP2/ERF domain
PfamPF008478.6E-112372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-292381IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-202381IPR016177DNA-binding domain
SMARTSM003805.9E-322386IPR001471AP2/ERF domain
PRINTSPR003672.3E-92435IPR001471AP2/ERF domain
PRINTSPR003672.3E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
TTGAAAAAAA ASSSGGGVIE EKKYKGVRKR KWGKYVSEIR LPNSRDRIWL GSYDTAEKAA  60
RAFDAALFCL RGPTANFNFP DDPPRIPGGQ ALAPTEIQAV AQHYANSSGG DNPPAAVELE  120
DASPPSSNSI DWSFLDLLDN SDGTNTTGGG NAGHVSDYGL FHDPAEMYIP PPPPIPDDND  180
DDHGIVPSFL WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1620821174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00330.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855787.11e-140PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-47ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A022Q0941e-138A0A022Q094_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]