PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00196.1.p
Common NameMIMGU_mgv1a001410mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92664.9 Da    PI: 5.8169
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182078357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Migut.A00196.1.p 20 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                      5679*****************************************************97 PP
2START183.31.3e-571643722205
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+s+g  g+++
  Migut.A00196.1.p 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVASRACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLSTGngGTIE 255
                       789*******************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+l++p+++g+s +++v+h+dl+ ++++++l
  Migut.A00196.1.p 256 LLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLVRPCEGGGSIIHIVDHIDLEPWSVPEVL 348
                       *********************************************9988899***************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXXX CS
             START 182 rslvksglaegaktwvatlqrqce 205
                       r+l++s++   ++t++a+l+++++
  Migut.A00196.1.p 349 RPLYESSMLLSQRTTLAALRQLRQ 372
                       ********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-171483IPR009057Homeodomain-like
PROSITE profilePS5007115.4671579IPR001356Homeobox domain
SMARTSM003891.3E-151783IPR001356Homeobox domain
CDDcd000862.17E-162080No hitNo description
PfamPF000463.2E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182278IPR009057Homeodomain-like
CDDcd146861.52E-672111No hitNo description
PROSITE profilePS5084827.029154369IPR002913START domain
CDDcd088756.10E-78158373No hitNo description
SMARTSM002343.4E-43163373IPR002913START domain
SuperFamilySSF559614.94E-37163358No hitNo description
Gene3DG3DSA:3.30.530.203.8E-23163369IPR023393START-like domain
PfamPF018523.4E-55164372IPR002913START domain
PfamPF086708.0E-51695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MMAVTSSCKD SSKMGLDNGK YVRYTPEQVE ALERLYHDCP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLSAMNKLLM EENDRLQKQV SHLVYENSYF  120
RQQTQNTTLA STDNSCESVV TSGQHHLTPQ NPPRDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHGCTGVAS RACGLVGLEP TRVAEILKDR PSWYRDCRAV  240
DVLNVLSTGN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPVQNFV RAEMLPSGYL VRPCEGGGSI IHIVDHIDLE PWSVPEVLRP LYESSMLLSQ  360
RTTLAALRQL RQISLEITQP NVTGWGRRPA ALRALGQRLS RGFNEAVNGF ADEGWSMIES  420
DGIDDVTVHV NTSPGKLMGT IQTYANGFPS MSNAVLCAKA SMLLKNVPPA ILLRFLREHR  480
SEWADSGVDA YAAAAVKAGP SSLPVSRGGC FGGQVILPLS QTIENEEFME VIRLENMAQY  540
RDDVIMPSDI FLLQVCNGVD ENAMGTCAEL IFAPIDASFS DDAPLLPSGF RIIPLDSKSD  600
ASSPNRTLDL ASTLEVGPNN KQCGDRNNGS VKSVMTIAFQ FAFEIHLQES VAVMARQYVR  660
SIISSVQRVA LALSPSPIGS HVSLRPQHSA PEGQTLARWI CQSYRFFLGV DLLKTVAEES  720
DSLLKTLWQH SDAVLCCSLK ELPVFTFANQ AGLDMLETTL IALQDITLEK IFNDNGRKTL  780
FAELPQIMQQ GFGYLEGGVC MSSMGRPISY ERAVAWKVMN EDEDVHCLCF MFSNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00196.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857948.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A022Q1L00.0A0A022Q1L0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]