PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.A00164.1.p
Common NameLOC105977208, MIMGU_mgv1a012739mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 249aa    MW: 27250.5 Da    PI: 8.0625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.A00164.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+++Ed  l+d+ +++G+  +W + + + g+ R++k+c++rw++yl
  Migut.A00164.1.p 14 RGAWSPQEDATLIDYLHKHGTSgNWISLPLKAGLQRCGKSCRLRWLNYL 62
                      89******************99*************************97 PP
2Myb_DNA-binding475.9e-1569118246
                       SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 
                       g++T+eEd ++  + ++ G++       W++Ia++++ gRt++++k++w++
  Migut.A00164.1.p  69 GPFTQEEDNIICSLYTKIGSRqaffiyIWSAIASHLP-GRTDNDVKNYWNT 118
                       89***********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.129966IPR017930Myb domain
SuperFamilySSF466892.36E-2412116IPR009057Homeodomain-like
SMARTSM007173.1E-91364IPR001005SANT/Myb domain
PfamPF002496.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231569IPR009057Homeodomain-like
CDDcd001679.47E-81662No hitNo description
SMARTSM007171.2E-967122IPR001005SANT/Myb domain
PROSITE profilePS5129414.12867124IPR017930Myb domain
PfamPF002491.0E-1169118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2370124IPR009057Homeodomain-like
CDDcd001673.08E-970117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRNPCCEKS KVKRGAWSPQ EDATLIDYLH KHGTSGNWIS LPLKAGLQRC GKSCRLRWLN  60
YLRPDIKHGP FTQEEDNIIC SLYTKIGSRQ AFFIYIWSAI ASHLPGRTDN DVKNYWNTKL  120
KKKLTTTTTG KAAATAAASR STTNPPTNVS APTSPVPLVL PSSNNSVLAN TDDQSVHSYD  180
EPVNFTLPGL ILEGSSNYSS GNNSCPFMDE SCGVLSWIWS QEEEAIGADN NADLFSIFSK  240
PHGLSQTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141267110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.A00164.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857956.11e-147PREDICTED: transcription factor RAX1-like
SwissprotQ9FG683e-62RAX1_ARATH; Transcription factor RAX1
TrEMBLA0A022Q1G81e-145A0A022Q1G8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-57myb domain protein 37
Publications ? help Back to Top
  1. Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
    A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
    Front Plant Sci, 2013. 4: p. 416
    [PMID:24204368]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu YT, et al.
    Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(3): p. 267-79
    [PMID:26646286]