PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.A00131.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23726 Da PI: 9.7692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.3e-38 | 32 | 128 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++rr+C++dC lapyfpa+++k+f n+hklFG++n++++lk++pe++r++a+++++ eA+arardPv G++gvi++l+++++ + +e Migut.A00131.1.p 32 ACAVCKYQRRRCTPDCKLAPYFPAHKQKEFLNAHKLFGVHNIVQILKKVPESRRQTAAETIIIEADARARDPVWGCLGVIRELERRIQLSTKE 124 7****************************************************************************************9999 PP DUF260 94 lall 97 l+++ Migut.A00131.1.p 125 LHTT 128 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
PROSITE profile | PS50891 | 24.868 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-37 | 32 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKPSTSTKPP SPGGGGGGGS SSSSSSAAAF QACAVCKYQR RRCTPDCKLA PYFPAHKQKE 60 FLNAHKLFGV HNIVQILKKV PESRRQTAAE TIIIEADARA RDPVWGCLGV IRELERRIQL 120 STKELHTTLA LLDFYRSRNL PNSGVYGGIN INNNINVNVN HVVNRDKKPM NMIGGVGNML 180 LHEGSSSQVM NGDDQNQELL AGVDAMEQFL NVSRFSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-27 | 22 | 129 | 1 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-27 | 22 | 129 | 1 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.A00131.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857741.1 | 1e-163 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A022PXW1 | 1e-113 | A0A022PXW1_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.A00131.1.p | 1e-162 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-29 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Migut.A00131.1.p |