PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.S099400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CO-like | ||||||||
Protein Properties | Length: 416aa MW: 45016.2 Da PI: 4.8129 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Manes.S099400.1.p 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777776 PP | |||||||
2 | zf-B_box | 23.9 | 8.4e-08 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C++++++++ + C++ + lC++C H + H++++ Manes.S099400.1.p 46 LICERCNSQPALFRCFEERISLCQNCDWMVHGNssstttHKRQT 89 68*************************99995588888888766 PP | |||||||
3 | CCT | 61.1 | 3.6e-21 | 358 | 401 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R RvKGrFvk+ Manes.S099400.1.p 358 RSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAG 401 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.527 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.78E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.873 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.53E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.59 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.0E-15 | 358 | 400 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.378 | 358 | 400 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNSQPALFRC 60 FEERISLCQN CDWMVHGNSS STTTHKRQTI NCFSGCPSAS ELSSIWSFVL NFPSVGESTC 120 EQELGLMSIA ENSSTGAWGP NENIINQSVS GAVAADEALD IAKSSVYGGT SSMPELISLP 180 NNTEKPVGSA NAPLSKLCCP GTKGPAVSGD DDLYEDFNMD EVDLNIENYE ELFGFTLNNS 240 EELFENGGID SLFGTKDISA ADSNCQGAGE EGLSVGLVNT MQQACSNAAS ADSMMSAKTE 300 PVLCFTTRQG HSSLSFSGLT GESSAGDYQD CGASSMLLMG EPPWCPPCPE SSCPSANRSN 360 AVMRYKEKKK TRKFEKRVRY ASRKARADVR RRVKGRFVKA GDNYDYDPLS QIRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.S099400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603135.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-152 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A199U9E8 | 0.0 | A0A199U9E8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027980m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-115 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Manes.S099400.1.p |