PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S095900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bZIP
Protein Properties Length: 156aa    MW: 17734.7 Da    PI: 6.521
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S095900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1439.9e-143088563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                       ++ +r+q+NRe+ArrsRq+K++ +++L   v eL+  N++    ++  ++++ ++++e+
  Manes.S095900.1.p 30 RKRKRMQSNRESARRSRQKKQQHLDKLMSQVTELKRDNSQILTSINITTQHYLNVEAEN 88
                       6789*************************************999999999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-111975No hitNo description
SMARTSM003388.8E-182690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6112891IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-123083No hitNo description
PfamPF001702.3E-103081IPR004827Basic-leucine zipper domain
CDDcd147026.73E-173181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSSGNSSG SSQLHNSGSE EDVQNLMDQR KRKRMQSNRE SARRSRQKKQ QHLDKLMSQV  60
TELKRDNSQI LTSINITTQH YLNVEAENSI LRAQMVELNQ RLESLNEILN YINTTNSVLE  120
TDDLQTSAAA DNFMNPLSLI YLNHPIMASP DFFQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248RRSRQKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S095900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603095.11e-110bZIP transcription factor 44-like
SwissprotC0Z2L51e-49BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A199U9I11e-108A0A199U9I1_MANES; Uncharacterized protein
STRINGcassava4.1_022517m2e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-47basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]