PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S084200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 384aa    MW: 43908.2 Da    PI: 6.1792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S084200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1318.9e-41291671128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvka.eekewyfFskrdkkyatgkrknr.atk 79 
                        lp+G+rF P+d+el+ +yL +k+++++l+  + i+ vd+y++ P++L             k++  +e++wyfF++r+kky++g+r++r a +
  Manes.S084200.1.p  29 LPVGYRFAPSDDELIRYYLLRKISNEPLPP-NRIHVVDLYNYSPQQLAGflflcfaaktyKLNReRESQWYFFTSREKKYPNGSRPKRnAGE 119
                        799************************999.77**************845899998876633333566********************7788 PP

                NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         gyWk tg+dk++l+ +++  g +k+L +y+g++++g+kt+W mhey l
  Manes.S084200.1.p 120 LGYWKPTGSDKAILD-GKKPLGFRKSLDYYEGKQRDGTKTNWKMHEYLL 167
                        9**************.999****************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4824199IPR003441NAC domain
PROSITE profilePS5100546.35129200IPR003441NAC domain
PfamPF023658.3E-2230166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEQNQNKNKG VAADCNTSSD DVERYFNSLP VGYRFAPSDD ELIRYYLLRK ISNEPLPPNR  60
IHVVDLYNYS PQQLAGFLFL CFAAKTYKLN RERESQWYFF TSREKKYPNG SRPKRNAGEL  120
GYWKPTGSDK AILDGKKPLG FRKSLDYYEG KQRDGTKTNW KMHEYLLHQS LVPSGATARG  180
KNPLQPKQLD EWVLCKIYSN KAEDKKNKND KDGGTVNIAE TEIPKADDVF TAQSLLCDNS  240
LMISQEYENG YGSYLLPPLW SDPPQPILDT VDNDPPPINN TFNNNFVYSV QPIQICQPPS  300
HYSNGFQPIY GREDQVWNIN SMQTSSINYH LLMPTGQELI HGNGDQVWDI NSIQTTTMND  360
HLYVPAEEPV FGCVNKFLIL TTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-36212068174Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S084200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618824.10.0protein BEARSKIN1-like
TrEMBLA0A199UA280.0A0A199UA28_MANES; Uncharacterized protein
STRINGcassava4.1_030551m1e-170(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15078714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.18e-41NAC domain containing protein 102