PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S062600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 255aa    MW: 29007.7 Da    PI: 6.5077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S062600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEd +l  +v+++G  +W+  +++ g+ R++k+c++rw +yl
  Manes.S062600.1.p 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPKYAGLSRCGKSCRLRWMNYL 61
                       799*****************99************************97 PP
2Myb_DNA-binding50.93.7e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ T eE+e+++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
  Manes.S062600.1.p  67 RGNYTGEEEEIILRLHESLGNR-WSAIAAQLP-GRTDNEIKNYWHTN 111
                        8999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.201961IPR017930Myb domain
SuperFamilySSF466892.16E-2911108IPR009057Homeodomain-like
SMARTSM007177.2E-111363IPR001005SANT/Myb domain
PfamPF002498.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-231568IPR009057Homeodomain-like
CDDcd001672.44E-91661No hitNo description
PROSITE profilePS5129424.08662116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2569115IPR009057Homeodomain-like
CDDcd001675.45E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRTPSCDKS GLRKGTWTPE EDRKLTAYVT RYGCWNWRQL PKYAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY TGEEEEIILR LHESLGNRWS AIAAQLPGRT DNEIKNYWHT NLKKRKSNDT  120
AKQDFIGLSQ PKKTRKVKIQ PNIIDPLNPA TTQIVESSTL CPTPSTSDFS SSTADNAAVT  180
SSCSDLKSDD EFAFLEAYEA PCGNFWTEPF LADNYYMPFE FLAPSLDPLS DPLLDGELLY  240
SYDVCDYGIL NWQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S062600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602728.10.0transcription factor MYB4-like
TrEMBLA0A199UB820.0A0A199UB82_MANES; Uncharacterized protein
STRINGcassava4.1_032937m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-59myb domain protein 14