PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S051400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 523aa    MW: 57463.4 Da    PI: 4.7886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S051400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-162572148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed  l+d+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Manes.S051400.1.p 25 KGPWTATEDAVLIDYVKKHGEGNWNSVQKNSGLMRCGKSCRLRWANHL 72
                       79******************************************9986 PP
2Myb_DNA-binding50.54.8e-1678121146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++T+eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
  Manes.S051400.1.p  78 KGSFTPEEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNFWNT 121
                        799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9872072IPR017930Myb domain
SuperFamilySSF466893.74E-3022119IPR009057Homeodomain-like
SMARTSM007175.2E-132474IPR001005SANT/Myb domain
PfamPF002491.7E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-242679IPR009057Homeodomain-like
CDDcd001675.42E-112772No hitNo description
PROSITE profilePS5129425.91273127IPR017930Myb domain
SMARTSM007172.3E-1677125IPR001005SANT/Myb domain
PfamPF002495.0E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2580126IPR009057Homeodomain-like
CDDcd001678.41E-1280121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MISNGGAAKE TGLSGQKATN QSLKKGPWTA TEDAVLIDYV KKHGEGNWNS VQKNSGLMRC  60
GKSCRLRWAN HLRPNLKKGS FTPEEERIII ELHAKLGNKW ARMASQLPGR TDNEIKNFWN  120
TRMKRRQRAG LPIYPQEFQE ETIPFHIKNQ IQHQHQEQNH PNVTNPSSSS FSSLFPSPRK  180
ASYNPSLTLL DPINFSPALD PLNNNLTRSF YSNPAVQFKS FPDNNASNCG LALPLSSYGR  240
SPSSITGFNQ NFPAQSIPMT PPSLHYSTSD FETNMSFTSL IMGAQVEPNE LFPGLGSEIP  300
SDQTPPRPNT PFSSNTSGGV CVREESSKNT DNDSETVVPE MMHDNRNSGL LDALLLESQN  360
LSRKEGKLTG ENSLVATDQK GKRVVDESAE EEEETEKEAA KRVKLSAMNG SENSGENNCC  420
DDLSSSQSSI GVKPNEEPMD EMNSMDDDLL SLLDNFPTTT PLPEWYRSRN IASGLSSSTV  480
VEGGEVEAEQ EASLAGGETT DETPNVDWAF GSSYWNNMPG IC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-321612618127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S051400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602597.10.0transcription factor MYB101-like
TrEMBLA0A199UBL70.0A0A199UBL7_MANES; Uncharacterized protein
STRINGcassava4.1_029822m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.18e-81myb domain protein 101