PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S015500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 230aa    MW: 25663 Da    PI: 9.1582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S015500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.4e-32152210159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C vkk+ver aedp++v++tYeg+H h+
  Manes.S015500.1.p 152 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCGVKKRVERLAEDPRMVITTYEGRHVHS 210
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-33137210IPR003657WRKY domain
SuperFamilySSF1182901.44E-28144211IPR003657WRKY domain
PROSITE profilePS5081129.08147212IPR003657WRKY domain
SMARTSM007746.7E-37152211IPR003657WRKY domain
PfamPF031062.2E-25153209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAAASQAMLN QGLFEEQEMP TQMGFFSFAP NSSFPLLGSC HQSLKGFTIP HSLAADAPST  60
ANLTETLLIS SAAAKQREDM SANLGGPHLF SVQRSSANLW TQGEVNEYLS NKRSGGDGHL  120
GVSALKMKKI KGRRKVREPR FCFKTMSDVD VLDDGYKWRK YGQKVVKNTL HPRSYYRCTQ  180
DNCGVKKRVE RLAEDPRMVI TTYEGRHVHS PSHDLEDSEA QSHLNNFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28143209874Probable WRKY transcription factor 4
2lex_A4e-28143209874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S015500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602135.11e-174probable WRKY transcription factor 13
SwissprotQ9SVB73e-58WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A199UBX51e-173A0A199UBX5_MANES; Uncharacterized protein
STRINGcassava4.1_015440m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-60WRKY DNA-binding protein 13