PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.S010300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26469 Da PI: 7.9151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.2 | 1e-41 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l++ Manes.S010300.1.p 41 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQSLQE 132 7******************************************************************************************* PP DUF260 93 elallkee 100 e++++++e Manes.S010300.1.p 133 EINSIRSE 140 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.784 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-41 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSRDRDRFDE IGKKIKRDTD LSSEMGRRHI LTPGILNTVT PCAACKLLRR KCAEECPFSP 60 YFSPHEPQKF AAVHKVFGAS NVSKMLMEVP ESQRADTANS LVYEANLRLR DPVYGCMGAI 120 SALQQQIQSL QEEINSIRSE IIKHKYREAN TSIISSTEHH HPAALVSSGT LSSIVVPQNI 180 PPLSPAPPPP PPPPPPPPPP PPLSAPSSIV VSSSSSSSIS SLYTPPTSST GYSSISSDNV 240 PYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-43 | 32 | 148 | 5 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-43 | 32 | 148 | 5 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.S010300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021602074.1 | 1e-176 | LOB domain-containing protein 13-like isoform X1 | ||||
Swissprot | Q9AT61 | 3e-76 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A199UCG4 | 1e-175 | A0A199UCG4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031391m | 1e-175 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 7e-73 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Manes.S010300.1.p |
Publications ? help Back to Top | |||
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