PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.S002300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20593.8 Da PI: 10.7502 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ L H +H Manes.S002300.1.p 47 FECKTCNKKFPSFQALGGHRASH 69 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.94E-8 | 46 | 121 | No hit | No description |
Pfam | PF13912 | 2.3E-12 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.087 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-10 | 98 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKRTRDSAAE MERLDMAKCL ILLSHTLHNK NPRKHFKSHD DDDNHLFECK TCNKKFPSFQ 60 ALGGHRASHK KPKMATENKP RTEKFLTSLE TSTVKTKVHE CSICGVEFAL GQALGGHMRR 120 HRAAMTRRLN SSHARGVSKL PVLRRSTSSK RVFGLDLNLT PLENDLQYLF GKMAPKVDPF 180 I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.S002300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601993.1 | 1e-132 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 8e-51 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A199UCC6 | 1e-131 | A0A199UCC6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031442m | 1e-132 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.S002300.1.p |