PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G126700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 850aa    MW: 93707.5 Da    PI: 6.7252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G126700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-17328427198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g +W++++++  +++s++yvl+ G     ++ +L++gD+++F++++
  Manes.18G126700.1.p 328 FEKVLSASDAGRIGRLVLPKACAEAFfpPISQSEGLPLSIKDVKGGEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTITFSRID 416
                          99**************************555556667***************9989999999***9.********************887 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            +++l +++++
  Manes.18G126700.1.p 417 -PGGKLIMGFRK 427
                          .77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-28323435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19325429IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-22326427No hitNo description
SMARTSM010191.0E-21328428IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715328429IPR003340B3 DNA binding domain
PfamPF023621.4E-14328427IPR003340B3 DNA binding domain
PROSITE profilePS5105013.991554604IPR011124Zinc finger, CW-type
PfamPF074963.2E-10559601IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MGSKVCMNAS CGITTTREWK RGWRLRSGGY ACLCYTCGSA FENSVYCDTF HSEESGWREC  60
KICRKRLHCG CIASTYLIEI LDFGGIGCTT CAKISPLNSI HSNEISNGFG SVTANNAADL  120
ESPPPKNRVA GSTHDEGKLA QLCRLMEANE AKLLCLSEGA DTNAIPGHFR QEEIIHPIGE  180
AGTCFPNASR LSVGLSNFAK PDGIRSILET KDMHGSLAPS LTMTLGAPSG TTGFVPYPCR  240
AAEGREKSEA PPFQQGQRSR PILPKLSKSG PAASSEAKNV AVPELRIARP PADGRGKNQL  300
LPRYWPRITD QELQQLSGVL NSSIVPLFEK VLSASDAGRI GRLVLPKACA EAFFPPISQS  360
EGLPLSIKDV KGGEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTI TFSRIDPGGK  420
LIMGFRKATN NSDTQETQTT LPDATASAET SFSADCNIGW SKGESHRGRI NGEALQQPTT  480
EKKRYRNIGP KSKRLHMHSE DALELRLTWE EAQDLLRPPP RVKPSVVTIE DHEFEEFDEP  540
PVFGKRTIFV DRSSGGQEQW AQCDDCSKWR KLPEDALLPP KWTCSENVWD SSRCSCSASE  600
EMSPKDLDNL LRLSKDFKKR RIVERHKLSP ECEPSGLDAL ASAAVLGDNI GDFDEPSAGA  660
TTKHPRHRPG CTCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMLRKK KRQLEREAEI  720
SQQDNNDHKD ESEMISMSSN VALPVNNSEN EVGQNKETEL AETSAGQIDL NCDPNREEVQ  780
IDMPGFSMIN IGDPFDSYIK QNGIANLRCD RQSSFGSSLH SQSNGEYSRR LSDEAFLDSV  840
GWNREDRDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-703064352131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1698709KRRFKTLMLRKK
2698711KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G126700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601077.10.0B3 domain-containing transcription repressor VAL2-like
TrEMBLA0A2C9U3140.0A0A2C9U314_MANES; Uncharacterized protein
STRINGcassava4.1_001576m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2