PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G120200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23084 Da    PI: 8.0598
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G120200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.2e-25958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien   rqvtf+kRr+g lKKA+ELSvLCdae+ v ifs++gklye +
  Manes.18G120200.1.p  9 KRIENPVHRQVTFCKRRAGFLKKAKELSVLCDAEIGVFIFSTHGKLYELA 58
                         79*********************************************965 PP
2K-box57.17.6e-209017416100
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            ++e+  Lkkeie Lq+ +  llG    ++s+ eL  Le++Le  + +iRs+K+e++ ++i+ l++ke  l+++n++L+ k+ee
  Manes.18G120200.1.p  90 DAKEEIMMLKKEIEILQKGLSYLLGGRYAEMSIDELLMLERNLEIWICHIRSTKMEIMSKEIQLLRNKEGILKDANQYLQDKIEE 174
                          6789******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.254161IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27178IPR002100Transcription factor, MADS-box
CDDcd002651.25E-39279No hitNo description
PRINTSPR004044.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211056IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.97788178IPR002487Transcription factor, K-box
PfamPF014861.6E-2090172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGFLK KAKELSVLCD AEIGVFIFST HGKLYELATN  60
GSMQGLIEKY LNATGGSLQP DLPNQTHPLD AKEEIMMLKK EIEILQKGLS YLLGGRYAEM  120
SIDELLMLER NLEIWICHIR STKMEIMSKE IQLLRNKEGI LKDANQYLQD KIEETVELSK  180
FAAMTTNSPY PLTIQNEIFQ F*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G120200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601842.11e-148agamous-like MADS-box protein AGL12
SwissprotQ388413e-78AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A2C9U3L51e-147A0A2C9U3L5_MANES; Uncharacterized protein
STRINGXP_002526423.11e-114(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-72AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]