PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G119500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 179aa    MW: 19721.9 Da    PI: 7.5468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G119500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.2e-182070155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s+ykGVr++k +g+Wv+eIr+p+    +  r +lg++ t+e Aa a + a  +l+g
  Manes.18G119500.1.p 20 SKYKGVRRRK-WGKWVSEIRVPN----ThERLWLGTYSTPEAAAVAFDLASYCLRG 70
                         89*****998.**********93....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-282084No hitNo description
SuperFamilySSF541713.73E-182075IPR016177DNA-binding domain
PfamPF008479.9E-112070IPR001471AP2/ERF domain
PROSITE profilePS5103221.6012184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-252185IPR001471AP2/ERF domain
SMARTSM003802.6E-282190IPR001471AP2/ERF domain
PRINTSPR003674.8E-92233IPR001471AP2/ERF domain
PRINTSPR003674.8E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSAAQHLHHR SSSPNAANQS KYKGVRRRKW GKWVSEIRVP NTHERLWLGT YSTPEAAAVA  60
FDLASYCLRG GEQFTSLNGR LNFPQLLPSH VRDNMSPKSI QKAASNAGMA IDAHMILNMT  120
RSSSNESIRN EGSSDSSVDV GLSEVEINWE NVCSCGSCEG TQTKYDRESL NISVEDYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141684972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G119500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600681.11e-132ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I85e-38ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2C9U2G31e-130A0A2C9U2G3_MANES; Uncharacterized protein
STRINGcassava4.1_027992m1e-131(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]