PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G108600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Whirly
Protein Properties Length: 230aa    MW: 25532.2 Da    PI: 10.6932
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G108600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly193.72.7e-60531891137
               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 
                          sv+k+kaal+v++v ptf++l sg++k++r+G ++l++++a++erkyd ek+q+falsatev++l++l++k+s+effhdp++ +sn+G+v
  Manes.18G108600.1.p  53 SVFKGKAALSVQPVPPTFTKLTSGHVKVERRGIMMLTFMPAMGERKYDHEKRQHFALSATEVGSLISLGPKDSSEFFHDPSMLSSNAGQV 142
                          79**************************************************************************************** PP

               Whirly  91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                          rk+l+++P +dG G+fv+lsv n+++++ne+f vP++ +efavl+++
  Manes.18G108600.1.p 143 RKSLSIKPQADGGGYFVSLSVVNNILRTNERFNVPLTAGEFAVLKTA 189
                          *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.6E-7343210IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.22E-6545227IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.0E-5754188IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMKLSRFLQQ SRNSFGNHID GRDASRLHTL TFQARISTSQ DFTANERIYA PYSVFKGKAA  60
LSVQPVPPTF TKLTSGHVKV ERRGIMMLTF MPAMGERKYD HEKRQHFALS ATEVGSLISL  120
GPKDSSEFFH DPSMLSSNAG QVRKSLSIKP QADGGGYFVS LSVVNNILRT NERFNVPLTA  180
GEFAVLKTAC SFALPHIMGW DRLTAKLPRE KVGSPSKANR QEPNLEWAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A8e-884720610169StWhy2
3n1i_A8e-884720610169protein StWhy2
3n1j_A8e-884720610169Protein StWhy2
3n1k_A8e-884720610169protein StWhy2
3n1l_A8e-884720610169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G108600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600346.11e-172single-stranded DNA-bindig protein WHY2, mitochondrial-like
SwissprotD9J0341e-89WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2C9U2H01e-170A0A2C9U2H0_MANES; Uncharacterized protein
STRINGcassava4.1_015441m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-88WHIRLY 2