PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G103100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 426aa MW: 45160 Da PI: 7.3733

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G103100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.7	7e-41	87	204	2	100
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ Manes.18G103100.1.p 87 PTTKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPss 176 5789*****************************************************************999877777777774433344 PP TCP 89 ......................kaaksaakskks 100 +++++ Manes.18G103100.1.p 177 ksaplsfhgglafydahnnnngG------ENRRA 204 34455555555555532222220......33333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-38	93	199	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	93	147	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MMLMESQSNN QENIKSSSKD HHHHHQKQES SSAAAAAASL QLVSHENHGS TAAITTTSQA 60 PFMGSISNQI TLHPSTSNSN SSALTKPTTK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL 120 TRELGHKSDG ETIEWLLQQA EPAIIAATGT GTIPANFSTL NVSLRSSGTT ISAPSSKSAP 180 LSFHGGLAFY DAHNNNNGGE NRRAVGSNTT MLGFHHQLYP QTLVPDENYM RVKTYREDLF 240 KEPAAAATQQ ESTEPVNTTS NNKPPVAAAA ARAGLQDHFH QELGSIRPSN ILATPAMWAV 300 APAATNGSNA FWMLPVGGGT TTTAPMPETQ MWTFPAGGVT PMQRVNFSGG GRMSQVQLGS 360 MMVQQAVGGQ QLGLGVAESN MGILGSGADA YNSSRVGLGM NLEQHNHENQ QQGSDSGDEN 420 PNDSQ*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MMLMESQSNN QENIKSSSKD HHHHHQKQES SSAAAAAASL QLVSHENHGS TAAITTTSQA  60
PFMGSISNQI TLHPSTSNSN SSALTKPTTK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL  120
TRELGHKSDG ETIEWLLQQA EPAIIAATGT GTIPANFSTL NVSLRSSGTT ISAPSSKSAP  180
LSFHGGLAFY DAHNNNNGGE NRRAVGSNTT MLGFHHQLYP QTLVPDENYM RVKTYREDLF  240
KEPAAAATQQ ESTEPVNTTS NNKPPVAAAA ARAGLQDHFH QELGSIRPSN ILATPAMWAV  300
APAATNGSNA FWMLPVGGGT TTTAPMPETQ MWTFPAGGVT PMQRVNFSGG GRMSQVQLGS  360
MMVQQAVGGQ QLGLGVAESN MGILGSGADA YNSSRVGLGM NLEQHNHENQ QQGSDSGDEN  420
PNDSQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00228	DAP	Transfer from AT1G72010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G103100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601511.1	0.0	transcription factor TCP22
TrEMBL	A0A2C9U2B2	0.0	A0A2C9U2B2_MANES; Uncharacterized protein
STRING	cassava4.1_008256m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	5e-65	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.18G103100.1.p