PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G091700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 616aa    MW: 67856.5 Da    PI: 7.0011
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G091700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.52.1e-2969152186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++qe+laL+++r++m++ +r+++lk+plWeevs+k++e g+ rs+k+Ckek+en+ k++k++keg+ ++++++  t+++fdql+
  Manes.18G091700.1.p  69 RWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLAELGYYRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLQ 152
                          8********************************************************************975544..6******98 PP
2trihelix102.24.1e-32433517186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev +Li++r+ ++++++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+ kkr se+s+tcpyf+ql+
  Manes.18G091700.1.p 433 RWPKVEVEVLINLRTTLDTKYQENGPKGPLWEEISAGMQKLGYNRSAKRCKEKWENINKYFKKVKESTKKR-SEDSKTCPYFHQLN 517
                          8*********************************************************************8.89999*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.95762126IPR017877Myb-like domain
SMARTSM007170.06466128IPR001005SANT/Myb domain
CDDcd122032.61E-2468133No hitNo description
PfamPF138379.3E-2068154No hitNo description
PROSITE profilePS500907.248426490IPR017877Myb-like domain
SMARTSM007171.9E-4430492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-4431489IPR009057Homeodomain-like
PfamPF138374.4E-21432517No hitNo description
CDDcd122034.12E-26433497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MQGDSNTVQT TASVALVSTA TMVPEGGEVG AAGGGGGGGG GGGPNSSGDE DKSIIRVDEG  60
DRMSYGANRW PRQETLALLK IRSDMDSVFR DSSLKGPLWE EVSRKLAELG YYRSAKKCKE  120
KFENVYKYHK RTKEGRTGKS EGKTYRFFDQ LQALETHHHH HQSQLAAAPP PSQQPPLSKP  180
QPPNTTPATL PWSNNPPTAS HVAVPSTTNT ANIITSHNNN GASSADPTIN AMPLSSSHPL  240
NPSQNIIPSF QILTSHLFSS STSSSTASDE GYQETRKRKR KWKDFFERLT KDVMKKQEEL  300
QRKFLETVEK HEHERMAREE AWRMQEMARI NREHELLIQE RTTAAAKDAA VIAFLQKMSG  360
LQNSIRTLDI PVPQPQPPPP VAPALAPAPA LSPAAAPPQP RQPPPAPVVM NLDVSRKDNG  420
QNNAVVSSSS SSRWPKVEVE VLINLRTTLD TKYQENGPKG PLWEEISAGM QKLGYNRSAK  480
RCKEKWENIN KYFKKVKEST KKRSEDSKTC PYFHQLNVLY KEKISKTNEN SANHGGGGHA  540
SVPSTTTMEP LMVRPEQQWP VQNENPSEKL MDHEDDIEDD DDENDGDTEE EDEGGGRGCF  600
EVVASKPTAS LGNGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G091700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601597.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2C9U1R30.0A0A2C9U1R3_MANES; Uncharacterized protein
STRINGcassava4.1_025037m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-120Trihelix family protein