PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G091600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 617aa    MW: 67612.3 Da    PI: 6.3214
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G091600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.25.4e-2985169187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++ k+plWee+s+k++e g++rs+k+Ckek+en+ k++k+++eg+ ++  ++ +t+++fdqlea
  Manes.18G091600.1.p  85 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEISRKLAELGYNRSAKKCKEKFENVFKYHKRTREGRTGK--QEGKTYRFFDQLEA 169
                          8********************************************************************96..55557*******85 PP
2trihelix101.19e-32445530187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev aLi++r++++ ++ ++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Manes.18G091600.1.p 445 RWPKVEVEALIKLRTNLDCKYPDNGPKGPLWEDISAGMRKLGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 530
                          8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.0E-582144IPR001005SANT/Myb domain
PROSITE profilePS500907.25984142IPR017877Myb-like domain
CDDcd122031.18E-2584149No hitNo description
PfamPF138378.1E-1984169No hitNo description
SMARTSM007170.0051442504IPR001005SANT/Myb domain
PROSITE profilePS500907.213444502IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-4444501IPR009057Homeodomain-like
CDDcd122032.26E-25444509No hitNo description
PfamPF138377.5E-22444531No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLGDSSTVLA TTTTAAAAAG GDGGVAAASA GGSSSDAPPP SHQLPGGGGV AHESTSEVAQ  60
VGSNNSFEDD KGRGDEGDRS FGGNRWPRQE TLALLKIRSD MDVAFRDASV KGPLWEEISR  120
KLAELGYNRS AKKCKEKFEN VFKYHKRTRE GRTGKQEGKT YRFFDQLEAF ENHASSSSLS  180
SQPPPPPPPQ TQPQQVKPQT PAVTTIAMPV VNPPITTVPS TTTKAAPLAA NMSQGIVSTG  240
INLSIPSFPP ANPTILPSAQ ATTNPTTNPS LFSNFSPDLF SNSTSSSTSS DVELHGRHGK  300
KRKWKDFFER IMKEVIHKQE DMQRKFLEAI AKREHDRMIR EESWRMQEMT RINREREILA  360
QERSMAAAKD AAIMAFLQKL SDQQNPGQVP AQPPAAAQQP PPPQPTPQPI TVVPVAPAAP  420
AQPVINLDMK SGNGDQSFSP ASSSRWPKVE VEALIKLRTN LDCKYPDNGP KGPLWEDISA  480
GMRKLGYNRS AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA LYKNKNKSDP  540
SSNIQLKPEN SVPLMVRPEQ QWPPAEEEHN PADSVMEDLE SDHQDEDDKD NDDDEDEEDE  600
AGGYEIVANR PSAAAG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G091600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601133.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-145TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2C9U2N20.0A0A2C9U2N2_MANES; Uncharacterized protein
STRINGcassava4.1_003781m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-153Trihelix family protein