PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G091500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 447aa MW: 51431.3 Da PI: 6.9442 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.2 | 1.2e-24 | 121 | 216 | 1 | 84 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +W+++ v++Li+a+++++e++++++ +kk++W+ vs++m+ergf++sp+qC++k+++lnkrykk++e+ +++ +++++++ Manes.18G091500.1.p 121 KWSDKTVRLLITAVSYIGEDISSECdgvlrrklavlQKKGKWKLVSNVMAERGFHVSPQQCEDKFNDLNKRYKKLNEMLGRGtSCQVVEN 210 7*********************99888999999999**********************************************56899988 PP trihelix 79 cpyfdq 84 ++d Manes.18G091500.1.p 211 PELLDV 216 887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-22 | 121 | 244 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MERNFSQGGL IPGGASFGGL ALRGSIRLGH QAQYQHAVHQ QQHLSRRQGS SIHPSVHEEV 60 PLTIGTVNNS DKTISLINYN KGDKGKNSPS DEDEANYAED GDDDHNEASR GNKGLPWQRI 120 KWSDKTVRLL ITAVSYIGED ISSECDGVLR RKLAVLQKKG KWKLVSNVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKKLNEMLG RGTSCQVVEN PELLDVIHYL TEKEKDEVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPPLQ HSLKLALRSK DDHDNHDMKR NQHDDLDENN QEVETDDHDE 300 FEENHASHGE SRGIYGVSRG SMKRLRQGQA HDDACFRNSS QDGNKGSYSH LQIGQVDMNQ 360 MSSESTRAAW LQKQWIESRT LQLEEQKLQI QLEMLELEKQ RMKWKTFSRK RDHELEKMRM 420 ENERMKLENK RMAMELKGKE IGADFN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G091500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600103.1 | 0.0 | uncharacterized protein LOC110605780 | ||||
TrEMBL | A0A2C9U1Y0 | 0.0 | A0A2C9U1Y0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034370m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-148 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G091500.1.p |